PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g27520.1.p
Common NameBRADI_3g27520, LOC100840033
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family E2F/DP
Protein Properties Length: 349aa    MW: 37533.2 Da    PI: 9.903
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g27520.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP83.51.7e-2693179371
           E2F_TDP   3 eksLrlltqkflklleksee.givtlnevakeLvse.....................dvknkrRRiYDilNVLealnliekkekneirwkg 71 
                       +++Lr++++k   ++ek+e+ g++t+neva+eLv+e                     d+kn+rRR+YD+lNVL+a+++i k +k+ei+wkg
  Bradi3g27520.1.p  93 NRGLRQFSMK---VCEKVESkGRTTYNEVADELVAEfsdpnsnigspdpdnpntqqyDEKNIRRRVYDALNVLMAMDIIYK-DKKEIQWKG 179
                       689*******...*****999************************************************************.*******98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0094044.0E-1194348IPR015648Transcription factor DP
Gene3DG3DSA:1.10.10.104.7E-4488185IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013721.0E-3691179IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023191.8E-2494179IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467858.16E-2094180IPR011991Winged helix-turn-helix DNA-binding domain
CDDcd144581.15E-38184287IPR014889Transcription factor DP, C-terminal
SMARTSM011381.3E-74186346IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440742.51E-40186296No hitNo description
PfamPF087812.8E-40187319IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006357Biological Processregulation of transcription from RNA polymerase II promoter
GO:0007049Biological Processcell cycle
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0000981Molecular FunctionRNA polymerase II transcription factor activity, sequence-specific DNA binding
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MVPGARSTGG VAHSASNSAA NAGSPSGRSR PGKGAAAAAA TTSASTSTPA RGSTVARRLS  60
DLEIKGDGAP SPQTAASKKK KKGAHVVGPD KGNRGLRQFS MKVCEKVESK GRTTYNEVAD  120
ELVAEFSDPN SNIGSPDPDN PNTQQYDEKN IRRRVYDALN VLMAMDIIYK DKKEIQWKGL  180
PRTSMSDIDK LKIKLIGQKG RIDKKSAYLQ ELQDQYVGLQ NLVERNEQLY SSGDAPSGGV  240
ALPFILVQTR PHATVEVEIS EDMQLVHLDF NSTPFELHDD SFVLKAMGLS GKEETDGTLA  300
LVANGIERSS TPNVYPHRSP QPARRSGLRL QTSPPIPGIL KGRVKHEH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B3e-3690184693PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3727520.0AK372752.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3011E24.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003573972.10.0PREDICTED: transcription factor-like protein DPB
SwissprotQ9FNY21e-125DPB_ARATH; Transcription factor-like protein DPB
TrEMBLI1I4A40.0I1I4A4_BRADI; Uncharacterized protein
STRINGBRADI3G27520.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP128338109
Representative plantOGRP25111734
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.11e-124Transcription factor DP